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--- biology:plant_pathogens [2023/05/25 12:17] – chkuo
+++ biology:plant_pathogens [2024/09/11 12:02] (current) – removed chkuo
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-====== Plant Pathogens ======
-===== Phytoplasma =====
-    * [[http://en.wikipedia.org/wiki/Phytoplasma]]
-    * 植物菌質
-===== Agrobacteria =====
-    * //Agrobacterium tumefaciens// and related bacteria; see [[https://arc.ipmb.sinica.edu.tw/]]
-===== Xylella fastidiosa =====
-    * [[http://en.wikipedia.org/wiki/Xylella_fastidiosa]]
-    * Causes several plant diseases, including Pierce's disease that is a threat to the wine industry in California
-    * Genome sequences
-      * Complete
-        * //Xylella fastidiosa// 9a5c ([[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=271|GPID = 271]], host = __citrus__: citrus variegated chlorosis)
-        * //Xylella fastidiosa// Temecula1 ([[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=285|GPID = 285]], host = __grapevine__: Pierce's disease)
-        * //Xylella fastidiosa// M12 ([[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=17823|GPID = 17823]], host = __almond__: almond leaf scorch. A-genotype)
-        * //Xylella fastidiosa// M23 ([[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18457|GPID = 18457]], host = __almond__: almond leaf scorch, G-genotype)
-      * Permanent Draft
-        * //Xylella fastidiosa// Ann-1 ([[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=261|GPID = 261]], host = __oleander__: almond leaf scorch)
-        * //Xylella fastidiosa// Dixon ([[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=260|GPID = 260]], host = __almond__: oleander leaf scorch)
-      * In Progress
-        * //Xylella fastidiosa// Pierce's Disease Strain (__grapevine__: Pierce's disease)
-    * Links
-      * [[http://www.tactri.gov.tw/htdocs/intro/pad/auba/auba.asp|蘇秋竹 @ 農業藥物毒物試驗所]]
-      * [[http://www.cnr.berkeley.edu/xylella/|Xylella web site @ UC Berkeley]]
-      * [[http://nature.berkeley.edu/~rodrigo/Lab%20page/|Almeida Lab @ UC Berkeley]]
-      * [[http://www.cnr.berkeley.edu/xylella/purcell/|Purcell Lab @ UC Berkeley]]
-===== Xanthomonas spp. =====
-    * [[http://en.wikipedia.org/wiki/Xanthomonas]]
-==== Xanthomonas axonopodis ====
-      * [[http://en.wikipedia.org/wiki/Xanthomonas_axonopodis]]
-      * Citrus canker (//Xanthomonas axonopodis// pv. //citri//), 柑桔潰瘍病
-      * Genome sequence: [[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=297|GPID = 297]]
-==== Xanthomonas campestris ====
-      * [[http://en.wikipedia.org/wiki/Xanthomonas_campestris]]
-      * Black rot of cabbage (//Xanthomonas campestris// pv. //campestris//), 甘藍黑腐病
-      * Genome sequence: [[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=296|GPID = 296]]
-==== Xanthomonas oryzae ====
-      * [[http://en.wikipedia.org/wiki/Xanthomonas_oryzae]]
-      * Rice bacterial leave blight (//Xanthomonas oryzae// pv. //oryzae//), 水稻白葉枯病
-      * Genome sequence: [[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=12931|GPID = 12931]]
-===== Ralstonia solanacearum =====
-    * [[http://en.wikipedia.org/wiki/Ralstonia_solanacearum]]
-    * Bacterial wilt, 青枯病
-    * Strains within this species complex cause bacterial wilt in a wide range of plant species and display varying degrees of host specificity.
-    * Genome sequence: [[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13|GPID = 13]]
-===== Pseudomonas syringae =====
-    * [[http://en.wikipedia.org/wiki/Pseudomonas_syringae]]
-    * This species can infect a broad range of plant hosts. Individual pathovar usually has a high degree of host specificity.
-    * Genome sequence: [[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=323|GPID = 323]]
-===== Acidovorax avenae =====
-    * [[http://en.wikipedia.org/wiki/Acidovorax_avenae]]
-    * Bacterial fruit blotch (BFB), 細菌性果斑病
-    * Genome sequence: [[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15708|GPID = 15708]]
-===== Erwinia spp. =====
-    * [[http://en.wikipedia.org/wiki/Erwinia]]
-    * Bacterial soft rot (BSR), 軟腐病
-==== Erwinia carotovora ====
-    * [[http://en.wikipedia.org/wiki/Erwinia]]
-    * Soft rot of Chinese cabbage, 結球白菜軟腐病
-==== Erwinia chrysanthemi ====
-    * [[http://en.wikipedia.org/wiki/Erwinia_chrysanthemi]]
-    * Soft rot of orchid, 洋蘭軟腐病
-==== Erwinia pyrifoliae ====
-    * Stain Ep1/96, [[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=34779|GPID = 34779]]
-    * Strain DSM 12163, [[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=37877|GPID = 37877]], [[http://www.ncbi.nlm.nih.gov/pubmed/20047678|Pubmed id = 20047678]]
-    * Pathogens of Asian pears, 梨類火傷病
-==== Erwinia tasmaniensis ====
-    * [[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20585|GPID = 20585]], [[http://www.ncbi.nlm.nih.gov/pubmed/18462403|Pubmed id = 18462403]]
-    * Non-pathogenic plant-associated bacteria
-===== Phellinus noxius =====
-    * [[http://en.wikipedia.org/wiki/Magnaporthe_grisea]]
-    * Brown root rot disease, 褐根病
-    * Fungal pathogen in the phylum Basidiomycota (擔子菌).
-===== Magnaporthe grisea =====
-    * [[http://en.wikipedia.org/wiki/Magnaporthe_grisea]]
-    * Rice blast, 稻熱病
-    * Fungal pathogen in the phylum Ascomycota (子囊菌).