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--- computers:bioinfo_server_configuration [2024/07/31 11:05] – [HH-suite] hychang
+++ computers:bioinfo_server_configuration [2024/12/20 23:51] (current) – [bbtools] chkuo
@@ Line 673: / Line 673: @@
 ===== bbtools =====
   * BBMap short-read aligner and a bunch of tools (shell scripts)
-  * [[https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/installation-guide/]]
+  * [[https://jgi.doe.gov/data-and-tools/software-tools/bbtools/]]
 <code bash>
@@ Line 1527: / Line 1527: @@
 # 2024/07/29
 hychang@koa[~]$ sudo apt install parallel
-[sudo] password for hychang:
-Reading package lists... Done
-Building dependency tree
-Reading state information... Done
-The following additional packages will be installed:
-  sysstat
-Suggested packages:
-  isag
-The following NEW packages will be installed:
-  parallel sysstat
-upgraded, 2 newly installed, 0 to remove and 1 not upgraded.
-Need to get 556 kB of archives.
-After this operation, 2221 kB of additional disk space will be used.
-Do you want to continue? [Y/n] Y
-Get:1 http://archive.ubuntu.com/ubuntu bionic/universe amd64 parallel all 20161222-1 [260 kB]
-Get:2 http://security.ubuntu.com/ubuntu bionic-security/main amd64 sysstat amd64 11.6.1-1ubuntu0.2 [295 kB]
-Fetched 556 kB in 2s (275 kB/s)
-Preconfiguring packages ...
-Selecting previously unselected package sysstat.
-(Reading database ... 207671 files and directories currently installed.)
-Preparing to unpack .../sysstat_11.6.1-1ubuntu0.2_amd64.deb ...
-Unpacking sysstat (11.6.1-1ubuntu0.2) ...
-Selecting previously unselected package parallel.
-Preparing to unpack .../parallel_20161222-1_all.deb ...
-Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by paralle
-l'
-Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/pa
-rallel.moreutils.1.gz by parallel'
-Unpacking parallel (20161222-1) ...
-Setting up sysstat (11.6.1-1ubuntu0.2) ...
-Creating config file /etc/default/sysstat with new version
-update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in
- auto mode
-Created symlink /etc/systemd/system/multi-user.target.wants/sysstat.service → /l
-ib/systemd/system/sysstat.service.
-Setting up parallel (20161222-1) ...
-Processing triggers for systemd (237-3ubuntu10.57) ...
-Processing triggers for man-db (2.8.3-2ubuntu0.1) ...
-Processing triggers for ureadahead (0.100.0-21) ...####################################.......]
-ureadahead will be reprofiled on next reboot
 hychang@koa[~]$ parallel --version
 GNU parallel 20161222