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start [2010/11/25 22:38] – chkuostart [2025/07/16 15:54] (current) – chkuo
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 ====== The Kuo Lab ====== ====== The Kuo Lab ======
-We are a research group in the [[http://ipmb.sinica.edu.tw/|Institute of Plant and Microbial Biology]], [[http://www.sinica.edu.tw/|Academia Sinica]], Taiwan. The principal investigator of our group is Chih-Horng Kuo. Our research interests include: Evolution, Genomics, Metagenomics, Microbiology, and Bioinformatics.  +  * We are a research group in the [[https://ipmb.sinica.edu.tw/|Institute of Plant and Microbial Biology (IPMB)]], [[https://www.sinica.edu.tw/|Academia Sinica]], Taiwan.  
- +    * Lab website: [[https://ipmb.sinica.edu.tw/chkuo/]] 
-Please visit our lab website at: [[http://ipmb.sinica.edu.tw/chkuo/]] +    * Principal investigator: [[https://ipmb.sinica.edu.tw/chkuo/chkuo.php|Chih-Horng Kuo]]
- +
-**Restricted areas: [[user:start|user-only]]; [[member:start|member-only]]; [[admin:start|admin-only]].** +
- +
-===== Protocols ===== +
-==== DNA Isolation ==== +
-  * [[protocols:beadbeater]]: BeadBeater  +
-  * [[protocols:Padovan_2000]]: Phytoplasma DNA extraction, based on [[http://mic.sgmjournals.org/cgi/content/full/146/4/893|Padovan et al. (2000)]] +
-  * [[protocols:Prabu_2008]]: Phytoplasma isolation, based on [[http://www.springerlink.com/content/452t307572706p24/fulltext.pdf|Prabu et al. (2008)]] +
-  * [[protocols:Yu_Morrison_2004]]: Repeated Bead Beating Plus Column (RBB+C) Method, based on [[http://www.biotechniques.com/BiotechniquesJournal/2004/May/Improved-extraction-of-PCR-quality-community-DNA-from-digesta-and-fecal-samples/biotechniques-116769.html|Yu & Morrison 2004]]: Improved extraction of PCR-quality community DNA from digesta and fecal samples. +
- +
-==== PCR ==== +
-  * [[protocols:16S_rDNA_primers]]: 16S rDNA primers +
-  * [[protocols:16S_rDNA_library]]: 16S rDNA library +
- +
-==== Electrophresis ==== +
-  * [[member:protocols:loading_buffer]]: Loading buffer +
- +
- +
-===== Tutorials ===== +
-  * [[tutorials:learning_linux|Learning Linux]] +
-    * [[tutorials:bash|Bash]]: Bourne-again shell +
-    * [[tutorials:linux_essential_commands|Linux Essential Commands]] +
-  * [[tutorials:learning_perl|Learning Perl]] +
-    * [[tutorials:perl_quick_reference|Perl Quick Reference]] +
-    * [[tutorials:perl_exercises|Perl Exercises]] +
-    * [[tutorials:perl_examples|Perl Examples]] +
- +
-===== Computers ===== +
-  * [[computers:Mac_basic_setup|Mac basic setup]] +
-  * [[computers:server_basic_setup|Server basic setup]] +
-    * [[computers:web_server_configuration|Web server configuration]] +
-    * [[computers:bioinfo_server_configuration|Bioinfo server configuration]] +
-    * [[computers:megaraid_megacli|MegaRAID MegaCli]] +
- +
-===== Bioinformatics ===== +
-  * [[bioinformatics:batch_download_entrez]]: Batch download of GenBank records using Entrez query +
-  * [[bioinformatics:mcl]]: Markov cluster algorithm (MCL) +
-  * [[bioinformatics:tools]]: Tools for bioinfomatic analysis +
-  * [[bioinformatics:genome_assembly]]: Genome assembly (mainly for prokaryotic genomes) +
-  * [[bioinformatics:genome_annotation]]: Genome annotation (mainly for prokaryotic genomes) +
- +
- +
-===== Biology ===== +
-  * [[biology:biologists]]: A list of biologists +
-  * [[biology:plant_pathogens]]: A list of interesting/important plant pathogens  +
- +
-===== Wiki ===== +
-  * [[wiki:dokuwiki]]: The wiki engine used to run this site +
-  * [[wiki:syntax]]: Dokuwiki syntax guide +
-  * [[playground:playground]]: Feel free to experiment with editing here +
- +
-==== Wiki modification ==== +
-  * [[wiki:geshi_r]]: Syntax highlighting for ''R'' language using ''GeSHi''+
  
 +  * Related groups
 +    * [[https://sites.google.com/view/ipmb-amt|Agrobacterium-Mediated Transformation (AMT)]]
 +    * [[https://sites.google.com/view/ipmb-pem|Plant and Environmental Microbiology (PEM)]]
 +    * [[https://sites.google.com/view/as-big|Bacteriology Interest Group (BIG)]]
  
 +  * Resources
 +    * [[https://disc.stat.sinica.edu.tw/|Statistical Cooperation Center, Academia Sinica (統計合作社)]]
 +    * [[https://irpcm.ipmb.sinica.edu.tw/|International Research Programme on Comparative Mycoplasmology (IRPCM)]]
 +    * [[https://mollicutes.ipmb.sinica.edu.tw/|Mollicutes Taxonomy]]
 +    * [[https://arc.ipmb.sinica.edu.tw/|Agrobacteria-Rhizobia Complex (ARC)]]
start.1290695914.txt.gz · Last modified: by chkuo