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tutorials:ai_llm_tools [2025/09/15 18:00] – [Additional Points] chkuotutorials:ai_llm_tools [2026/05/08 23:14] (current) – [Preface] chkuo
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 ===== About ===== ===== About =====
-  * A brief guide to using large language models (LLMs) often referred to as artificial intelligence (AI) tools, such as ChatGPT by OpenAI and Gemini by Google, in the context of academic research and writing. By Chih-Horng Kuo (chk@gate.sinica.edu.tw). Suggestions are welcome.+  * A brief guide to using large language models (LLMs) often referred to as artificial intelligence (AI) tools, such as ChatGPT/Claude/Gemini, in the context of academic research and writing. By Chih-Horng Kuo (chk@gate.sinica.edu.tw). Suggestions are welcome.
   * Target audience: undergraduate students, graduate students, and postdocs (in biology)   * Target audience: undergraduate students, graduate students, and postdocs (in biology)
  
  
 ===== Preface ===== ===== Preface =====
 +  * Privacy, both regarding institutional rules and personal reasons, is important
   * For work: Ethics first!   * For work: Ethics first!
     * Respect the general rules of academic integrity     * Respect the general rules of academic integrity
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     * Particularly helpful in the context of emotional support     * Particularly helpful in the context of emotional support
   * In some ways, LLMs are like crystals of human knowledge   * In some ways, LLMs are like crystals of human knowledge
-  * Useful for learning new topics efficiently through interactive Q&A +    * Useful for learning new topics efficiently through interactive Q&A 
-  * Perform especially well on topics with abundant, high-quality training data+    * Perform especially well on topics with abundant, high-quality training data
   * Highly proficient in language, particularly useful for clear and precise expression of ideas   * Highly proficient in language, particularly useful for clear and precise expression of ideas
   * Great tools for self-improvement   * Great tools for self-improvement
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     * Trained to be agreeable, they often conform to both your explicit instructions and implicit tone     * Trained to be agreeable, they often conform to both your explicit instructions and implicit tone
     * Helpful to make your implicit thoughts become explicit and better organized     * Helpful to make your implicit thoughts become explicit and better organized
-  * Suggested practice + 
-    * Start with a solid frame of reference +===== Suggested practice ===== 
-      * Provide clear context for the task, including your goals and expectations +  * Start with a solid frame of reference 
-      * What exactly do you want to obtain? +    * Provide clear context for the task, including your goals and expectations 
-      * How do you want the LLM to act? +      * Learn the basic of markdown can be very helpful ("help me to learn the very basic of markdown language in 5 minutes, explain to me how can I use this in my prompt to improve the clarity of my instruction to you"
-      * Are your expectations realistic? +    * What exactly do you want to obtain? 
-      * Examples of possible uses (varying in feasibility and reliability): +    * How do you want the LLM to act? 
-        * Polish arguments +    * Are your expectations realistic? 
-        * Organize thoughts +    * Examples of possible uses (varying in feasibility and reliability): 
-        * Brainstorm new ideas +      * Polish arguments 
-        * Identify major gaps in reasoning +      * Organize thoughts 
-        * Provide critical review +      * Brainstorm new ideas 
-    * Assess the output, make decisions, and provide feedback +      * Identify major gaps in reasoning 
-    * Use an iterative process; may involve gradual refinement or drastic changes +      * Provide critical review 
-    * Fact check, fact check, and fact check!!! +  * Assess the output, make decisions, and provide feedback 
-    * Know when to stop; did the last iteration provide meaningful improvement?+  * Use an iterative process; may involve gradual refinement or drastic changes 
 +  * Fact check, fact check, and fact check!!! 
 +  * Know when to stop; did the last iteration provide meaningful improvement?
   * Exercises   * Exercises
     * Use figure legends as input, ask for a manuscript outline as output; explore different ways of ordering the figures     * Use figure legends as input, ask for a manuscript outline as output; explore different ways of ordering the figures
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   * Test the tool with topics that you know well first for evaluation   * Test the tool with topics that you know well first for evaluation
   * Push boundaries, learn the situations that LLMs are useful (or not)   * Push boundaries, learn the situations that LLMs are useful (or not)
-  * Different tools for different uses+  * Different tools for different uses; 2026 impressions:
     * ChatGPT is chatty; highly conversational, discussions can take unexpected turns, great for exploration     * ChatGPT is chatty; highly conversational, discussions can take unexpected turns, great for exploration
 +    * Claude is often more "get to the point" compares to ChatGPT
     * Gemini integrates Google Search; useful for questions with clear answers and you want the web sources     * Gemini integrates Google Search; useful for questions with clear answers and you want the web sources
   * Learn to judge output, know when to reject the suggestions   * Learn to judge output, know when to reject the suggestions
   * Over time, thoughtful use of LLMs can improve your writing, reflection, and decision-making skills   * Over time, thoughtful use of LLMs can improve your writing, reflection, and decision-making skills
   * AI/LLM tools are under intensive development, different tools may perform better at different tasks; develop your own taste and workflow, keep an eye on the development   * AI/LLM tools are under intensive development, different tools may perform better at different tasks; develop your own taste and workflow, keep an eye on the development
 +  * More advanced tools, such as Claude Cowork/Code, are not covered here, but definitely worth exploring
  
  
  
  
tutorials/ai_llm_tools.1757930403.txt.gz · Last modified: by chkuo