tutorials:perl_examples
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| tutorials:perl_examples [2010/08/03 02:24] – chkuo | tutorials:perl_examples [2017/04/12 17:27] (current) – chkuo | ||
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| - | ====== Perl Examples | + | ====== Perl examples |
| - | * Find empty files in a directory: [[tutorial: | + | * Find empty files in a directory: [[tutorials: |
| - | * Unwrap sequences in fasta files: [[tutorial: | + | * Rename files based on regex: [[tutorials: |
| - | * Find homopolymeric regions: [[tutorial: | + | |
| - | * Generate command scripts to run blast+: [[tutorial:perl:cmd_blast+.1.pl]] | + | * Generate command scripts to run blast+: [[tutorials: |
| - | * Execute command scripts: [[tutorial:perl:execute.3.pl]] | + | * Execute command scripts: [[tutorials: |
| + | * Parse blast+ results, 1 hit per line: [[tutorials: | ||
| + | * Parse blast+ results, 1 HSP per line: [[tutorials: | ||
| + | |||
| + | * Unwrap sequences in fasta files: [[tutorials: | ||
| + | * Find homopolymeric regions: [[tutorials: | ||
| + | * Correct sequence orientation in a fasta file: [[tutorials:perl:correct_fasta_orientation.1.pl]] | ||
| + | * Trim sequence based on lucy: [[tutorials:perl:trim_lucy.2.pl]] | ||
| + | * Trim sequence based on regex: [[tutorials: | ||
tutorials/perl_examples.1280773444.txt.gz · Last modified: 2010/08/03 02:24 by chkuo