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--- tutorials:r_plots [2026/09/11 16:13] – created chkuo
+++ tutorials:r_plots [2026/09/16 17:48] (current) – hychang
@@ Line 2: / Line 2: @@
 ===== Box plots =====
+An user guide to walk through data visualization by box plot in R.\\
+Please download the tutorial and open with browser (like Chrome) for more detail.\\
+[[https://drive.google.com/file/d/1g4NGAsX2VFJZ0xZkNwlBMMadp4LyTPHY/view?usp=drive_link|R Markdown Document for Boxplots]]\\
 ==== One batch with replicates ====
+=== Sample input ===
+  * {{sample1.xlsx}}
+=== R script ===
+  * Please download the R script using the link below.
+  * [[ https://drive.google.com/file/d/1AGVfmruh8ZEB9RTWmeKa-KBbS9-Zpp9x/view?usp=drive_link | single-batch_boxplot.R ]]\\
+=== Sample output ===
+Plots can be exported as **PDF** or **PNG** files. Here shows the **PNG** files.\\
+  * **Version 1**: Displays all data points using a single, uniform color.
+    * PNG: setting width 600 and height 400.
+    * {{ simple_boxplot1_w600h400.png }}
+    * PDF: width 6 inch and height 4 inch. {{ simple_boxplot1_w6h4.pdf }}
+  * **Version 2**: Colors data points by Strain and adds statistical significance group labels at the top.
+    * PNG: setting width 600 and height 400.
+    * {{ simple_boxplot2_w600h400.png }}
+    * PDF: width 6 inch and height 4 inch. {{ simple_boxplot2_w6h4.pdf }}
+\\
 ==== Multiple batches with replicates ====
+=== Sample input ===
+  * {{sample2.xlsx}}
+=== R script ===
+  * Please download the R script using the link below.
+  * [[ https://drive.google.com/file/d/1XbvymKhrPuArYFD4bu3JaP2r2bGRtTas/view?usp=drive_link | mutiple-batches_boxplot.R ]]
+=== Sample output ===
+Plots can be exported as **PDF** or **PNG** files. Here shows the **PNG** files.\\
+  * **Version 1**: Displays data with batches shown in distinct colors.
+    * PNG: setting width 600 and height 400.
+    * {{ mult_boxplot1_w600h400.png }}
+    * PDF: width 6 inch and height 4 inch. {{ mult_boxplot1_w6h4.pdf }}
+  * **Version 2**: Displays batches in distinct colors and adds statistical significance group labels at the top.
+    * PNG: setting width 600 and height 400.
+    * {{ mult_boxplot2_w600h400.png }}
+    * PDF: width 6 inch and height 4 inch. {{ mult_boxplot2_w6h4.pdf }}