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====== R plots ======

===== Box plots =====

An user guide to walk through data visualization by box plot in R.\\
Please download the tutorial and open with browser (like Chrome) for more detail.\\

[[https://drive.google.com/file/d/1g4NGAsX2VFJZ0xZkNwlBMMadp4LyTPHY/view?usp=drive_link|R Markdown Document for Boxplots]]\\


==== One batch with replicates ====
=== Sample input ===
  * {{sample1.xlsx}}

=== R script ===
  * Please download the R script using the link below.
  * [[ https://drive.google.com/file/d/1AGVfmruh8ZEB9RTWmeKa-KBbS9-Zpp9x/view?usp=drive_link | single-batch_boxplot.R ]]\\

=== Sample output ===
Plots can be exported as **PDF** or **PNG** files. Here shows the **PNG** files.\\
 
  * **Version 1**: Displays all data points using a single, uniform color.
    * PNG: setting width 600 and height 400.
    * {{ simple_boxplot1_w600h400.png }}
    * PDF: width 6 inch and height 4 inch. {{ simple_boxplot1_w6h4.pdf }}
  * **Version 2**: Colors data points by Strain and adds statistical significance group labels at the top.
    * PNG: setting width 600 and height 400.
    * {{ simple_boxplot2_w600h400.png }}
    * PDF: width 6 inch and height 4 inch. {{ simple_boxplot2_w6h4.pdf }}
\\

==== Multiple batches with replicates ====
=== Sample input ===
  * {{sample2.xlsx}}
=== R script ===
  * Please download the R script using the link below.
  * [[ https://drive.google.com/file/d/1XbvymKhrPuArYFD4bu3JaP2r2bGRtTas/view?usp=drive_link | mutiple-batches_boxplot.R ]]

=== Sample output ===
Plots can be exported as **PDF** or **PNG** files. Here shows the **PNG** files.\\

  * **Version 1**: Displays data with batches shown in distinct colors.
    * PNG: setting width 600 and height 400.
    * {{ mult_boxplot1_w600h400.png }}
    * PDF: width 6 inch and height 4 inch. {{ mult_boxplot1_w6h4.pdf }}
  * **Version 2**: Displays batches in distinct colors and adds statistical significance group labels at the top.
    * PNG: setting width 600 and height 400.
    * {{ mult_boxplot2_w600h400.png }}
    * PDF: width 6 inch and height 4 inch. {{ mult_boxplot2_w6h4.pdf }}